Cancer Genomics Cloud Pilots
The National Cancer Institute seeks to sponsor the development of up to three to help meet the research community’s needs for storage, access and analysis of high quality, large-scale cancer genomic data and associated clinical information. The expectation is the development of an innovative model for computational analysis of biological data that has the potential to address current storage and analyses challenges. The proposed has the potential to democratize access to NCI-generated genomic data and provide a more cost-effective way to provide computational support to the cancer research community.
The National Cancer Institute has launched the NCIP Hub to help accelerate innovation in the cancer research community. It is an environment for scientific collaboration where researchers can access a variety of resources shared by other cancer researchers. The NCIP Hub is intended to support a community of members with a shared goal of democratizing access to data, tools, and standards across the cancer research community. Content contributions come from community members and can include seminar presentations, publications, training materials, data, tools, and bookmarks to useful sites and information, as well as discussions on them. Join the get started.and
The NCIP Open-Development Initiative
The NCI Wiki hosts individual wikis that document the development of applications, activities of working groups, collaborations, informatics projects, and work in specific domains. Visit the wiki dashboard and select the New Account link to participate. For more information, contact Application Support.
- Following the successful completion of a three-year pilot, NIH has awarded $64 million to establish six Data and Signature Generating Centers where scientists will catalogue and analyze cellular function and molecular activity in response to specific perturbations, including new therapeutic compounds under investigation. The data they produce will be collected in a database, the Library of Integrated Network-based Cellular Signatures (LINCS), that will be freely available to researchers. NIH News Release
- NIH has issued a Request for Information (RFI) titled "Input on Information Resources for Data-Related Standards Widely Used in Biomedical Science" (NOT-CA-14-054) as part of the Big Data to Knowledge (BD2K) initiative. Responses are due by September 30, 2014.
- The NCI Clinical Proteomic Tumor Analysis Consortium (CPTAC), partnering with the NVIDIA Foundation, has issued a request for proposals (RFP) for research in computational omics. NCI anticipates making up to three awards, with total available funding of $1.8 million. The NVIDIA Foundation will award one project at up to $200,000.
- NIH has issued the final version of its new policy on genomic data sharing. It will apply to all NIH-funded, large-scale human and non-human projects that generate genomic data, including research conducted with the support of NIH grants and contracts and within the NIH Intramural Research Program.
- GCN (Government Computing News): NCI builds out collaborative hub for cancer researchers
The NCI Biomedical Informatics Blog
The NCI Biomedical Informatics Blog provides a forum for the exploration of ideas and knowledge sharing across the NCI and throughout the wider biomedical-informatics and cancer-research community.
Topics recently under discussion include potential NCI Cancer Knowledge Clouds; NCIP support for open, community-driven software development; and intramural collaborations being pursued by NCIP staff. For a more complete description, scroll through the running list of topics contained in the left navigation bar.
Recently published articles authored by NCIP staff and members of the community include the following:
- Gaheen et al., caNanoLab: data sharing to expedite the use of nanotechnology in biomedicine.
- Thomas et al., ISA-TAB-Nano: A Specification for Sharing Nanomaterial Research Data in Spreadsheet-based Format.
- Freimuth et al., Life sciences domain analysis model.
Other publications are available in the Bibliography section of the NCIP website.